ATCC® 35682™ | Streptomyces kunmingensis

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 35682™
Strain Alias	80-3024
Isolation	Soil from Dagyanlow's Lake
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	September 13, 2024
Length	9,930,842 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	15 (0 Circularized)
N50	988,317 nt
%GC	70.7%

Annotations Summary
Number of CDS	8689
Number of Hypothetical Proteins	1160
Number of tRNA	71
Number of 5s rRNA	7
Number of 16s rRNA	7
Number of 23s rRNA	7

Input Reads Summary
Oxford Nanopore Read Count	792,952
Oxford Nanopore Median Q Score	25
Illumina Read Count	7,642,718
Illumina Mean Coverage Depth	113.157×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	7,642,718
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.81%
Estimated genome contamination	1.22%
Illumina depth of coverage	113.157×
ONT depth of coverage	229.555×

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions