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Overview
Genome Browser
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Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 43198™ |
| Strain Alias | NCDO 2674 [JCM 8724] |
| Isolation | Chicken caeca |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | February 25, 2023 |
| Length | 2,421,595 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 2,421,595 nt |
| %GC | 36.55% |
Annotations Summary | |
|---|---|
| Number of CDS | 2368 |
| Number of Hypothetical Proteins | 312 |
| Number of tRNA | 68 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 199,839 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 18,684,158 |
| Illumina Mean Coverage Depth | 1,011.714× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 18,684,158 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 95.58% |
| Estimated genome contamination | 0.8% |
| Illumina depth of coverage | 1,011.714× |
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