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  • Shigella
  • Shigella sonnei

Shigella sonnei (ATCC® 25931™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 1, 2022
Length5,101,532 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs6 (3 Circularized)
Assembly LevelChromosome
N504,903,508 nt
%GC50.9%
Organism Summary
NameATCC® 25931™
Genotype
IsolationFeces
Biosafety Level2
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS5,082
Number of Hypothetical Proteins1,353
Number of tRNA99
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count343,485
Oxford Nanopore Median Q Score25
Illumina Read Count11,016,812
Illumina Mean Coverage Depth283.158×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads11,016,812
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.56%
PassedEstimated genome contamination0.11%
PassedAverage depth of coverage283.158×
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