Organism Summary | |
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Catalog Number | ATCC® 13183™ |
Strain Alias | 533-1 |
Isolation | Pharyngeal tonsil |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | June 30, 2023 |
Length | 5,977,972 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (All Circularized) |
N50 | 5,777,394 nt |
%GC | 55.05% |
Annotations Summary | |
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Number of CDS | 5449 |
Number of Hypothetical Proteins | 229 |
Number of tRNA | 85 |
Number of 5s rRNA | 9 |
Number of 16s rRNA | 8 |
Number of 23s rRNA | 8 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 65,780 |
Oxford Nanopore Median Q Score | 25 |
Illumina Read Count | 10,598,940 |
Illumina Mean Coverage Depth | 249.151× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 10,598,940 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 100% |
Estimated genome contamination | 0.13% |
Average depth of coverage | 249.151× |