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  • Haemophilus
  • Haemophilus influenzae

Haemophilus influenzae (ATCC® 9795™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 28, 2020
Length1,884,487 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N501,884,487 nt
%GC38.05%
Organism Summary
NameATCC® 9795™
Genotype
IsolationSpinal fluid from patient with meningitis
Biosafety Level2
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS1,789
Number of Hypothetical Proteins472
Number of tRNA57
Number of 5s rRNA8
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count158,778
Oxford Nanopore Median Q Score28
Illumina Read Count12,525,249
Illumina Mean Coverage Depth887.294×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads12,525,249
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.67%
PassedEstimated genome contamination0%
PassedAverage depth of coverage887.294×
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