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- unclassified Dyadobacter
- Dyadobacter immobollis
Dyadobacter immobollis (ATCC® TSD-472™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 24, 2025 |
| Length | 6,997,650 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Scaffold |
| N50 | 6,997,650 nt |
| %GC | 47.4% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-472™ |
| Annotations Summary | |
|---|---|
| Number of CDS | 5,813 |
| Number of Hypothetical Proteins | 969 |
| Number of tRNA | 40 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 14,517 |
| Oxford Nanopore Median Q Score | 35 |
| Illumina Read Count | 5,781,908 |
| Illumina Mean Coverage Depth | 201.562× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,781,908
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.09%
Assembly Quality Control
Metrics assessing the assembly quality
2 out of 3 passed, 1 requires inspection
CautionEstimated genome completeness89.29%
PassedEstimated genome contamination0%
PassedAverage depth of coverage201.562×
Notes
This item has been published as Beta despite not meeting CheckM completeness criteria. The low completeness percentage has been attributed to a lack of robustness in the CheckM database for this organism This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM completeness metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.
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