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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 14, 2019 |
| Length | 2,616,312 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (All Circularized) |
| N50 | 2,516,435 nt |
| %GC | 33.16% |
| Organism Summary | |
|---|---|
| Name | ATCC® 15305™ |
| Strain Name | NCTC 7292 [ATCC 19701, NCIB 8711, S-41] |
| Isolation | Urine |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 2505 |
| Number of Hypothetical Proteins | 191 |
| Number of tRNA | 60 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 23,747 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 5,340,772 |
| Illumina Mean Coverage Depth | 478.828× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,340,772
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.44%
PassedEstimated genome contamination0.56%
PassedAverage depth of coverage478.828×
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