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Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 27544™ |
| Strain Alias | H 831 [NCTC 10142] |
| Isolation | Dog lung |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | December 12, 2025 |
| Length | 989,583 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| N50 | 986,417 nt |
| %GC | 25.93% |
Annotations Summary | |
|---|---|
| Number of CDS | 772 |
| Number of Hypothetical Proteins | 203 |
| Number of tRNA | 30 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 13,454 |
| Oxford Nanopore Median Q Score | 32 |
| Illumina Read Count | 6,810,280 |
| Illumina Mean Coverage Depth | 1,799.458× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 6,810,280 |
| Median Q score, all bases | 40 |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0.75% |
| Illumina depth of coverage | 1,799.458× |
| ONT depth of coverage | 167.628× |
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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