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  • Haemophilus
  • Haemophilus influenzae

Haemophilus influenzae (ATCC® 49144™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedOctober 29, 2021
Length1,901,589 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs19 (1 Circularized)
Assembly SummaryChromosome
N50351,237 nt
%GC37.97%
Organism Summary
NameATCC® 49144™
IsolationClinical isolate
Biosafety Level2
Type StrainNo
Antigenic PropertiesBiotype I
Annotations Summary
Number of CDS1,823
Number of Hypothetical Proteins514
Number of tRNA51
Number of 5s rRNA3
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count4,404
Oxford Nanopore Median Q Score23
Illumina Read Count4,567,536
Illumina Mean Coverage Depth475.195×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,567,536
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.67%
PassedEstimated genome contamination0%
PassedAverage depth of coverage475.195×
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