Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 29, 2021 |
| Length | 1,901,589 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 19 (1 Circularized) |
| Assembly Level | Chromosome |
| N50 | 351,237 nt |
| %GC | 37.97% |
| Organism Summary | |
|---|---|
| Name | ATCC® 49144™ |
| Genotype | |
| Isolation | Clinical isolate |
| Biosafety Level | 2 |
| Type Strain | No |
| Antigenic Properties | Biotype I |
| Annotations Summary | |
|---|---|
| Number of CDS | 1,823 |
| Number of Hypothetical Proteins | 514 |
| Number of tRNA | 51 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 4,404 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 4,567,536 |
| Illumina Mean Coverage Depth | 475.195× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,567,536
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.67%
PassedEstimated genome contamination0%
PassedAverage depth of coverage475.195×
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