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- Xanthomonas axonopodis subcluster 9.3
- Xanthomonas axonopodis pathovar vasculorum
Xanthomonas axonopodis pathovar vasculorum (ATCC® 13902™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | November 22, 2019 |
| Length | 5,040,364 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (All Circularized) |
| Assembly Level | Complete |
| N50 | 4,860,586 nt |
| %GC | 64.03% |
| Organism Summary | |
|---|---|
| Name | ATCC® 13902™ |
| Isolation | Sugarcane, Saccharum officinarum |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,396 |
| Number of Hypothetical Proteins | 594 |
| Number of tRNA | 53 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 69,161 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 3,395,270 |
| Illumina Mean Coverage Depth | 120.044× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads3,395,270
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.74%
PassedAverage depth of coverage120.044×
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