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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 13902™ |
| Strain Alias | XV 101 [ICMP 306, LMG 897, NCPPB 184] |
| Isolation | Sugarcane, Saccharum officinarum |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | November 22, 2019 |
| Length | 5,040,364 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (All Circularized) |
| N50 | 4,860,586 nt |
| %GC | 64.03% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4406 |
| Number of Hypothetical Proteins | 569 |
| Number of tRNA | 53 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 69,161 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 3,395,270 |
| Illumina Mean Coverage Depth | 120.044× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 3,395,270 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0.74% |
| Illumina depth of coverage | 120.044× |
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