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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 19003™ |
| Strain Alias | 57.071.066 [NCDC KC 740, R. Hugh 2390] |
| Isolation | Cerebrospinal fluid |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2023 |
| Length | 3,947,737 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (All Circularized) |
| N50 | 3,914,740 nt |
| %GC | 39.13% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3648 |
| Number of Hypothetical Proteins | 445 |
| Number of tRNA | 73 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 66,697 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 11,936,809 |
| Illumina Mean Coverage Depth | 403.024× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 11,936,809 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.44% |
| Estimated genome contamination | 0.36% |
| Illumina depth of coverage | 403.024× |
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