ATCC® 9793™ | Neisseria gonorrhoeae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 10, 2025
Length	2,203,179 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (2 Circularized)
N50	2,102,526 nt
%GC	52.27%

Annotations Summary
Number of CDS	2272
Number of Hypothetical Proteins	361
Number of tRNA	56
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	130,365
Oxford Nanopore Median Q Score	36
Illumina Read Count	6,225,052
Illumina Mean Coverage Depth	418.659×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	6,225,052
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.18%
Estimated genome contamination	0.23%
Illumina depth of coverage	418.659×
ONT depth of coverage	421.008×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions