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  • Acinetobacter calcoaceticus/baumannii complex
  • Acinetobacter baumannii

Acinetobacter baumannii (ATCC® BAA-2888™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedMarch 27, 2020
Length4,156,841 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs6 (3 Circularized)
Assembly SummaryChromosome
N504,125,338 nt
%GC39.03%
Organism Summary
NameATCC® BAA-2888™
IsolationTrachea
TagsGPS
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS3,912
Number of Hypothetical Proteins1,655
Number of tRNA73
Number of 5s rRNA6
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count528,058
Oxford Nanopore Median Q Score25
Illumina Read Count3,338,342
Illumina Mean Coverage Depth190.539×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,338,342
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.14%
PassedAverage depth of coverage190.539×
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