ATCC® 49607™ | Enterococcus durans

Overview

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Quality Control

Assembly Summary
Date Published	October 31, 2023
Length	3,225,753 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	12 (All Circularized)
N50	3,041,804 nt
%GC	37.7%

Annotations Summary
Number of CDS	3084
Number of Hypothetical Proteins	459
Number of tRNA	70
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	681,771
Oxford Nanopore Median Q Score	26
Illumina Read Count	12,985,544
Illumina Mean Coverage Depth	597.132×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	12,985,544
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.63%
Estimated genome contamination	0.75%
Illumina depth of coverage	597.132×
ONT depth of coverage	1,222.475×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions