ATCC® 43077™ | Streptococcus alactolyticus

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 43077™
Strain Alias	NCDO 1091 [CCUG 27297, CIP 103244, CNCTC 15/89, DSM 20728, HAMBI 1719, LMG 14808]
Isolation	Pig intestine
Tags	Type Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	November 30, 2023
Length	1,760,437 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	1,759,321 nt
%GC	40.61%

Annotations Summary
Number of CDS	1710
Number of Hypothetical Proteins	123
Number of tRNA	69
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	135,502
Oxford Nanopore Median Q Score	26
Illumina Read Count	7,790,284
Illumina Mean Coverage Depth	651.1×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	7,790,284
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	100%
Estimated genome contamination	0.94%
Illumina depth of coverage	651.1×
ONT depth of coverage	500.59×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions