ATCC® 49757™ | Enterococcus faecalis

Overview

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Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	3,237,185 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	8 (4 Circularized)
N50	3,054,793 nt
%GC	37.09%

Annotations Summary
Number of CDS	3160
Number of Hypothetical Proteins	426
Number of tRNA	65
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	201,950
Oxford Nanopore Median Q Score	37
Illumina Read Count	22,412,200
Illumina Mean Coverage Depth	1,025.99×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	22,412,200
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.63%
Estimated genome contamination	0.19%
Illumina depth of coverage	1,025.99×
ONT depth of coverage	611.2×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions