ATCC® BAA-3252™ | Acinetobacter baumannii

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	April 29, 2024
Length	3,924,001 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
Assembly Level	Chromosome
N50	2,805,594 nt
%GC	39%

Organism Summary
Name	ATCC® BAA-3252™
Isolation	Abscess
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	3,698
Number of Hypothetical Proteins	550
Number of tRNA	72
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	47,538
Oxford Nanopore Median Q Score	35
Illumina Read Count	8,064,090
Illumina Mean Coverage Depth	302.997×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads8,064,090

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.06%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.9%

PassedEstimated genome contamination0.61%

PassedAverage depth of coverage302.997×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Acinetobacter baumannii (ATCC® BAA-3252™)