Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2021 |
| Length | 3,984,015 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (1 Circularized) |
| N50 | 3,970,965 nt |
| %GC | 39.04% |
| Organism Summary | |
|---|---|
| Name | ATCC® 17961™ |
| Strain Name | CDC 7788 [13860, P. Baumann 55, R. Hugh 2424] |
| Isolation | Blood |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 3713 |
| Number of Hypothetical Proteins | 528 |
| Number of tRNA | 73 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 99,125 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 9,243,019 |
| Illumina Mean Coverage Depth | 313.452× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads9,243,019
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage313.452×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline