Organism Summary | |
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Catalog Number | ATCC® 27155™ |
Strain Alias | CDC 1461-67 [CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, ICMP 12534, ICPB 3435, JCM 1236, LMG 1286, NCTC 9381; Graham Price] |
Isolation | Knee laceration |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | July 30, 2021 |
Length | 4,691,993 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (All Circularized) |
N50 | 3,999,661 nt |
%GC | 55.11% |
Annotations Summary | |
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Number of CDS | 4248 |
Number of Hypothetical Proteins | 273 |
Number of tRNA | 77 |
Number of 5s rRNA | 8 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 67,382 |
Oxford Nanopore Median Q Score | 25 |
Illumina Read Count | 19,441,952 |
Illumina Mean Coverage Depth | 584.76× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 19,441,952 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 100% |
Estimated genome contamination | 0.44% |
Average depth of coverage | 584.76× |