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  • Legionella pneumophila
  • Legionella pneumophila subsp. pascullei

Legionella pneumophila subsp. pascullei (ATCC® 33737™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 31, 2022
Length3,458,902 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N503,458,902 nt
%GC38.19%
Organism Summary
NameATCC® 33737™
IsolationWater from shower head
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS3,061
Number of Hypothetical Proteins1,500
Number of tRNA43
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count7,158
Oxford Nanopore Median Q Score22
Illumina Read Count22,901,677
Illumina Mean Coverage Depth928.422×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads22,901,677
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.38%
PassedAverage depth of coverage928.422×
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