ATCC® 49643™ | Herminiimonas sp.

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 49643™
Strain Alias	NOX
Isolation	Filtrate of slow sand filters for drinking water
Biosafety Level	1
Type Strain	No

Assembly Summary
Date Published	March 24, 2025
Length	3,676,097 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	3,676,097 nt
%GC	53.98%

Annotations Summary
Number of CDS	3389
Number of Hypothetical Proteins	315
Number of tRNA	46
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	49,472
Oxford Nanopore Median Q Score	41
Illumina Read Count	2,301,908
Illumina Mean Coverage Depth	170.569×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	2,301,908
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.82%
Estimated genome contamination	0.4%
Illumina depth of coverage	170.569×
ONT depth of coverage	52.292×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions