Organism Summary | |
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Catalog Number | ATCC® MYA-2876™ |
Strain Alias | SC5314 |
Isolation | Clinical specimen |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | December 22, 2020 |
Length | 14,739,577 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 26 (0 Circularized) |
N50 | 1,048,372 nt |
%GC | 33.56% |
Annotations Summary | |
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Number of BUSCO Annotations | 726 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 555,912 |
Oxford Nanopore Median Q Score | 26 |
Illumina Read Count | 11,308,060 |
Illumina Mean Coverage Depth | 180.983× |
Illumina Median Q Score | 38 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 11,308,060 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
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Estimated genome completeness | 88.52% |
Average depth of coverage | 180.983× |