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Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 2,923,627 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (All Circularized) |
| Assembly Level | Complete |
| N50 | 2,878,927 nt |
| %GC | 32.72% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-1556™ |
| Genotype | pvl positive |
| Isolation | Wrist abcess of HIV+ man with history of IV drug use |
| Tags | MSA Component |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,860 |
| Number of Hypothetical Proteins | 370 |
| Number of tRNA | 59 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 171,054 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 15,984,232 |
| Illumina Mean Coverage Depth | 722.153× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads15,984,232
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.51%
PassedEstimated genome contamination0.64%
PassedAverage depth of coverage722.153×
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