Organism Summary | |
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Catalog Number | ATCC® 12853™ |
Strain Alias | A-9332 [Boots 1358, CBS 715.72, IFO 13414, ISP 5500, K-2J, NCIB 9343, NRRL B-2535, RIA 1375, RIA 690] |
Isolation | Soil |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | November 30, 2021 |
Length | 10,268,748 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 14 (1 Circularized) |
N50 | 1,007,785 nt |
%GC | 71.05% |
Annotations Summary | |
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Number of CDS | 8752 |
Number of Hypothetical Proteins | 1246 |
Number of tRNA | 67 |
Number of 5s rRNA | 6 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 79,448 |
Oxford Nanopore Median Q Score | 22 |
Illumina Read Count | 9,343,300 |
Illumina Mean Coverage Depth | 117.073× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,343,300 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.46% |
Estimated genome contamination | 1.57% |
Average depth of coverage | 117.073× |