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  • Haemophilus
  • Haemophilus influenzae

Haemophilus influenzae (ATCC® 49247™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedJuly 1, 2021
Length1,865,278 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N501,865,278 nt
%GC38.02%
Organism Summary
NameATCC® 49247™
Genotype
IsolationExpectorated sputum from male with pneumonia (clinical specimen); isolated January 1984
Biosafety Level2
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS1,745
Number of Hypothetical Proteins427
Number of tRNA57
Number of 5s rRNA7
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count74,494
Oxford Nanopore Median Q Score27
Illumina Read Count14,040,551
Illumina Mean Coverage Depth1,050.62×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads14,040,551
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.67%
PassedEstimated genome contamination0%
PassedAverage depth of coverage1,050.62×
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