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  • Legionella pneumophila
  • Legionella pneumophila subsp. pneumophila

Legionella pneumophila subsp. pneumophila (ATCC® 43290™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 28, 2020
Length3,369,573 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N503,369,573 nt
%GC38.23%
Organism Summary
NameATCC® 43290™
IsolationLung tissue
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS2,990
Number of Hypothetical Proteins1,464
Number of tRNA43
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count277,962
Oxford Nanopore Median Q Score27
Illumina Read Count4,475,488
Illumina Mean Coverage Depth266.331×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,475,488
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.19%
PassedAverage depth of coverage266.331×
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