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  • Acholeplasma
  • Acholeplasma granularum

Acholeplasma granularum (ATCC® 19168™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedNovember 30, 2021
Length1,454,634 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N501,454,634 nt
%GC29.42%
Organism Summary
NameATCC® 19168™
IsolationNasal cavity of pig
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS1,329
Number of Hypothetical Proteins582
Number of tRNA37
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count924,002
Oxford Nanopore Median Q Score25
Illumina Read Count27,092,335
Illumina Mean Coverage Depth2,559.564×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads27,092,335
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness98.65%
PassedEstimated genome contamination0%
PassedAverage depth of coverage2,559.564×
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