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  • Haemophilus
  • Haemophilus influenzae

Haemophilus influenzae (ATCC® 9007™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedDecember 23, 2021
Length1,815,307 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N501,815,307 nt
%GC38.05%
Organism Summary
NameATCC® 9007™
Genotype
IsolationSputum of patient with respiratory infection
Biosafety Level2
Type StrainNo
Antigenic PropertiesBiotype II
Annotations Summary
Number of CDS1,678
Number of Hypothetical Proteins374
Number of tRNA59
Number of 5s rRNA7
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count96,421
Oxford Nanopore Median Q Score24
Illumina Read Count23,562,632
Illumina Mean Coverage Depth1,796.208×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads23,562,632
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.67%
PassedEstimated genome contamination0%
PassedAverage depth of coverage1,796.208×
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