Organism Summary | |
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Catalog Number | ATCC® BAA-1024™ |
Strain Alias | K-12 [DSM 13084] |
Isolation | Clinical specimen; healthy human child, June 1989 |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | February 26, 2020 |
Length | 2,444,182 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (All Circularized) |
N50 | 2,258,172 nt |
%GC | 39.63% |
Annotations Summary | |
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Number of CDS | 2204 |
Number of Hypothetical Proteins | 264 |
Number of tRNA | 68 |
Number of 5s rRNA | 6 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 55,478 |
Oxford Nanopore Median Q Score | 21 |
Illumina Read Count | 10,939,916 |
Illumina Mean Coverage Depth | 479.294× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 10,939,916 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.39% |
Estimated genome contamination | 1.17% |
Average depth of coverage | 479.294× |