Organism Summary | |
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Catalog Number | ATCC® 19321™ |
Strain Alias | NCPPB 800 [81782; XU102, D. Dye YJ2, ICMP 351, LMG 2676] |
Isolation | Wheat stem rust |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | February 26, 2020 |
Length | 5,279,184 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 6 (3 Circularized) |
N50 | 4,552,089 nt |
%GC | 52.92% |
Annotations Summary | |
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Number of CDS | 4899 |
Number of Hypothetical Proteins | 505 |
Number of tRNA | 78 |
Number of 5s rRNA | 8 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 158,884 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 5,491,758 |
Illumina Mean Coverage Depth | 209.667× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 5,491,758 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 100% |
Estimated genome contamination | 1.19% |
Average depth of coverage | 209.667× |