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  • Pantoea
  • Pantoea ananatis

Pantoea ananatis (ATCC® 19321™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedFebruary 26, 2020
Length5,279,184 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs6 (3 Circularized)
Assembly SummaryChromosome
N504,552,089 nt
%GC52.92%
Organism Summary
NameATCC® 19321™
IsolationWheat stem rust
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,960
Number of Hypothetical Proteins1,771
Number of tRNA83
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count158,884
Oxford Nanopore Median Q Score24
Illumina Read Count5,491,758
Illumina Mean Coverage Depth209.667×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,491,758
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination1.19%
PassedAverage depth of coverage209.667×
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