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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 17741™ |
| Strain Alias | 381 [CIP 106306, CIP 106400, DSM 413, IAM 12479, ICPB 3979, IFO 16712, JCM 6892, LMD 22.21, LMG 4218, NCCB 22021, NCIB 11627, VKM B-1324] |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | January 28, 2021 |
| Length | 5,237,042 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 2,853,118 nt |
| %GC | 66.8% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5155 |
| Number of Hypothetical Proteins | 633 |
| Number of tRNA | 53 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 413,519 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 17,736,928 |
| Illumina Mean Coverage Depth | 465.828× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 17,736,928 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.7% |
| Estimated genome contamination | 1.29% |
| Illumina depth of coverage | 465.828× |
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