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- Pantoea agglomerans group
- Pantoea agglomerans
Pantoea agglomerans (ATCC® 29002™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 29, 2020 |
| Length | 4,897,390 nt |
| Sequencing Technology | Illumina + Oxford Nanopore |
| Number of Contigs | 3 (All Circularized) |
| Assembly Level | Complete |
| N50 | 4,161,457 nt |
| %GC | 57.5% |
| Organism Summary | |
|---|---|
| Name | ATCC® 29002™ |
| Isolation | Blood |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,508 |
| Number of Hypothetical Proteins | 308 |
| Number of tRNA | 79 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 571,207 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 3,984,158 |
| Illumina Mean Coverage Depth | 146.027× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads3,984,158
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.98%
PassedEstimated genome contamination0.66%
PassedAverage depth of coverage146.027×
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