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  • Legionella
  • Legionella pneumophila

Legionella pneumophila (ATCC® BAA-2830™)

Overview
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Quality Control
Assembly Summary
Date PublishedApril 28, 2023
Length3,357,983 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N503,357,983 nt
%GC38.2%
Organism Summary
NameATCC® BAA-2830™
IsolationBlood of human with pneumonia
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS2,954
Number of Hypothetical Proteins1,427
Number of tRNA43
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count133,151
Oxford Nanopore Median Q Score25
Illumina Read Count10,002,861
Illumina Mean Coverage Depth380.356×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads10,002,861
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.19%
PassedAverage depth of coverage380.356×
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