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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 10, 2025 |
| Length | 4,721,884 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 6 (3 Circularized) |
| N50 | 4,541,643 nt |
| %GC | 58.66% |
| Organism Summary | |
|---|---|
| Name | ATCC® 49394™ |
| Isolation | Ulcer on Rutilus rutilus |
| Tags | |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4574 |
| Number of Hypothetical Proteins | 498 |
| Number of tRNA | 97 |
| Number of 5s rRNA | 10 |
| Number of 16s rRNA | 9 |
| Number of 23s rRNA | 9 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 104,416 |
| Oxford Nanopore Median Q Score | 40 |
| Illumina Read Count | 4,232,956 |
| Illumina Mean Coverage Depth | 226.27× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,232,956
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.03%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness91.81%
PassedEstimated genome contamination1.08%
PassedAverage depth of coverage226.27×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. This item has been approved for publication to the AGP, despite not meeting ATCC's CheckM minimum completion or maximum contamination score requirements. This item has been manually compared to the available public reference genomes for this organism and the completion and contamination statistics are comparable or surpass those of the identified public genomes.
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