Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 11, 2025 |
| Length | 1,450,984 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 1,450,984 nt |
| %GC | 32.12% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-139™ |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 1358 |
| Number of Hypothetical Proteins | 251 |
| Number of tRNA | 37 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 125,904 |
| Oxford Nanopore Median Q Score | 43 |
| Illumina Read Count | 1,542,906 |
| Illumina Mean Coverage Depth | 286.113× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads1,542,906
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.02%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness98.38%
PassedEstimated genome contamination0%
PassedAverage depth of coverage286.113×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline