Organism Summary | |
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Catalog Number | ATCC® 12403™ |
Strain Alias | Typing strain D136C(3) [3 Cole 106, CIP 82.45] |
Isolation | Fatal septicemia |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Antigenic Properties | Lancefield's group B |
Assembly Summary | |
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Date Published | April 5, 2023 |
Length | 2,116,691 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 6 (0 Circularized) |
N50 | 1,537,148 nt |
%GC | 35.54% |
Annotations Summary | |
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Number of CDS | 2032 |
Number of Hypothetical Proteins | 175 |
Number of tRNA | 80 |
Number of 5s rRNA | 7 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 1,341,967 |
Oxford Nanopore Median Q Score | 26 |
Illumina Read Count | 5,760,563 |
Illumina Mean Coverage Depth | 351.243× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 5,760,563 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 100% |
Estimated genome contamination | 0.18% |
Average depth of coverage | 351.243× |