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Overview
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Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 29267™ |
| Strain Alias | ICPB EC 155 [4778, CFBP 3613, CIP 105195, DSM 3873, ICMP 1591, LMG 2657, NCPPB 3004, PDDCC 1591] |
| Isolation | Brown spot and rot of lady-slipper orchid (Cypripedium sp.) |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | February 21, 2025 |
| Length | 6,591,952 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (4 Circularized) |
| N50 | 5,225,185 nt |
| %GC | 54.07% |
Annotations Summary | |
|---|---|
| Number of CDS | 6082 |
| Number of Hypothetical Proteins | 478 |
| Number of tRNA | 79 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 43,939 |
| Oxford Nanopore Median Q Score | 32 |
| Illumina Read Count | 11,295,436 |
| Illumina Mean Coverage Depth | 253.983× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 11,295,436 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 99.3% |
| Estimated genome contamination | 3.48% |
| Illumina depth of coverage | 253.983× |
| ONT depth of coverage | 48.352× |
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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