Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 33930™ |
| Strain Alias | R387 |
| Isolation | Cerebrospinal fluid |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2020 |
| Length | 1,986,331 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 1,974,288 nt |
| %GC | 38.22% |
| Annotations Summary | |
|---|---|
| Number of CDS | 1920 |
| Number of Hypothetical Proteins | 120 |
| Number of tRNA | 57 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 472,032 |
| Oxford Nanopore Median Q Score | 28 |
| Illumina Read Count | 21,496,870 |
| Illumina Mean Coverage Depth | 1,414.842× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 21,496,870 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.56% |
| Estimated genome contamination | 0.44% |
| Illumina depth of coverage | 1,414.842× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline