ATCC® BAA-472™ | Enterococcus faecium

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	December 23, 2021
Length	3,067,419 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (5 Circularized)
Assembly Level	Chromosome
N50	2,707,922 nt
%GC	37.86%

Organism Summary
Name	ATCC® BAA-472™
Isolation	Blood of patient with infective endocarditis from Clinical Lab at Methodist Hospital; isolated July 1992
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	2,929
Number of Hypothetical Proteins	318
Number of tRNA	71
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	73,677
Oxford Nanopore Median Q Score	23
Illumina Read Count	4,457,281
Illumina Mean Coverage Depth	317.987×
Illumina Median Q Score	38

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads4,457,281

PassedMedian Q score, all bases38

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.63%

PassedEstimated genome contamination0.44%

PassedAverage depth of coverage317.987×