Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 43348™ |
| Strain Alias | UCRDAC 1184-13 |
| Isolation | Gypsophila paniculata galls |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2023 |
| Length | 5,292,480 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 8 (All Circularized) |
| N50 | 4,128,703 nt |
| %GC | 54.71% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4881 |
| Number of Hypothetical Proteins | 456 |
| Number of tRNA | 78 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 206,576 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 12,020,960 |
| Illumina Mean Coverage Depth | 317.833× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 12,020,960 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99% |
| Estimated genome contamination | 1.39% |
| Illumina depth of coverage | 317.833× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline