ATCC® 700542™ | Allomeiothermus silvanus

Overview

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Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	3,683,966 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (All Circularized)
N50	3,250,325 nt
%GC	62.68%

Annotations Summary
Number of CDS	3648
Number of Hypothetical Proteins	584
Number of tRNA	47
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	39,547
Oxford Nanopore Median Q Score	30
Illumina Read Count	6,689,320
Illumina Mean Coverage Depth	267.919×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	6,689,320
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.19%
Estimated genome contamination	0.15%
Illumina depth of coverage	267.919×
ONT depth of coverage	57.834×

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions