Organism Summary | |
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Catalog Number | ATCC® 3004™ |
Strain Alias | [ATCC 25426, CBS 924.69, ETH 20200, IFO 13014, IMRU 3004, ISP 5313, NRRL B-1811, RIA 1206] |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | September 16, 2025 |
Length | 7,833,324 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 7 (1 Circularized) |
N50 | 1,971,613 nt |
%GC | 72.67% |
Annotations Summary | |
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Number of CDS | 6518 |
Number of Hypothetical Proteins | 852 |
Number of tRNA | 60 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 79,850 |
Oxford Nanopore Median Q Score | 36 |
Illumina Read Count | 6,772,764 |
Illumina Mean Coverage Depth | 214.032× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 6,772,764 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 98.67% |
Estimated genome contamination | 0.69% |
Average depth of coverage | 214.032× |
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions