ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Legionella pneumophila
  • Legionella pneumophila subsp. pneumophila

Legionella pneumophila subsp. pneumophila (ATCC® 43736™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedJuly 1, 2021
Length3,371,196 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N503,371,196 nt
%GC38.32%
Organism Summary
NameATCC® 43736™
IsolationLung aspirate
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS2,997
Number of Hypothetical Proteins1,468
Number of tRNA43
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count89,216
Oxford Nanopore Median Q Score26
Illumina Read Count9,639,808
Illumina Mean Coverage Depth399.524×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads9,639,808
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.19%
PassedAverage depth of coverage399.524×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline