Organism Summary | |
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Catalog Number | ATCC® 51299™ |
Strain Alias | NJ-3 |
Genotype | vanB ant(6)-I aac(6') aph(2"") |
Isolation | Peritoneal fluid |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | August 3, 2020 |
Length | 3,440,453 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 11 (3 Circularized) |
N50 | 1,775,344 nt |
%GC | 37.32% |
Annotations Summary | |
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Number of CDS | 3359 |
Number of Hypothetical Proteins | 464 |
Number of tRNA | 67 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 133,816 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 5,002,336 |
Illumina Mean Coverage Depth | 291.73× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 5,002,336 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.53% |
Estimated genome contamination | 0.69% |
Average depth of coverage | 291.73× |