Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 10,279,655 bp |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (0 Circularized) |
| N50 | 3,711,396 bp |
| %GC | 70.53% |
| Organism Summary | |
|---|---|
| Name | ATCC® 31267™ |
| Isolation | Soil, Ito City, Shizuoka Pref., Japan |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 8,923 |
| Number of Hypothetical Proteins | 5,914 |
| Number of tRNA | 91 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 187,722 |
| Oxford Nanopore Median Q Score | 14 |
| Illumina Read Count | 8,714,977 |
| Illumina Mean Coverage Depth | 177.244× |
| Illumina Median Q Score | 38 |
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Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads8,714,977
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness95.17%
PassedEstimated genome contamination1.22%
PassedAverage depth of coverage177.244×
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