ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Streptomyces
  • Streptomyces avermitilis

Streptomyces avermitilis (ATCC® 31267™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 26, 2020
Length10,279,655 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs5 (0 Circularized)
Assembly LevelChromosome
N503,711,396 nt
%GC70.53%
Organism Summary
NameATCC® 31267™
IsolationSoil
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS8,923
Number of Hypothetical Proteins5,226
Number of tRNA91
Number of 5s rRNA6
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count187,722
Oxford Nanopore Median Q Score14
Illumina Read Count8,714,977
Illumina Mean Coverage Depth177.244×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads8,714,977
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness95.17%
PassedEstimated genome contamination1.22%
PassedAverage depth of coverage177.244×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline