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  • Enterococcus faecium

Enterococcus faecium (ATCC® 19434™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedJune 30, 2022
Length2,529,584 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N502,529,584 nt
%GC38.2%
Organism Summary
NameATCC® 19434™
TagsType Strain
Biosafety Level2
Type StrainYes
Antigenic PropertiesLancefield's Group D
Annotations Summary
Number of CDS2,371
Number of Hypothetical Proteins895
Number of tRNA68
Number of 5s rRNA6
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count178,428
Oxford Nanopore Median Q Score23
Illumina Read Count20,064,876
Illumina Mean Coverage Depth1,048.171×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads20,064,876
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.63%
PassedEstimated genome contamination0%
PassedAverage depth of coverage1,048.171×
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