ATCC® BAA-1717™ | Staphylococcus aureus

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	February 26, 2020
Length	2,908,200 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (1 Circularized)
Assembly Level	None
N50	2,877,824 nt
%GC	32.76%

Organism Summary
Name	ATCC® BAA-1717™
Genotype	pvl positive
Isolation	Adolescent patient with severe sepsis syndrome at Texas Children's Hospital
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	2,847
Number of Hypothetical Proteins	348
Number of tRNA	59
Number of 5s rRNA	7
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	6,400
Oxford Nanopore Median Q Score	17
Illumina Read Count	4,661,569
Illumina Mean Coverage Depth	299.737×
Illumina Median Q Score	38

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads4,661,569

PassedMedian Q score, all bases38

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.51%

PassedEstimated genome contamination0.64%

PassedAverage depth of coverage299.737×