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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 51858™ |
| Strain Alias | Vancomycin-dependent #4 |
| Genotype | Presence of vanB was confirmed by PCR in the source material |
| Isolation | Blood |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2020 |
| Length | 3,149,253 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 10 (2 Circularized) |
| N50 | 2,893,334 nt |
| %GC | 37.95% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3012 |
| Number of Hypothetical Proteins | 354 |
| Number of tRNA | 69 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 113,290 |
| Oxford Nanopore Median Q Score | 27 |
| Illumina Read Count | 18,256,656 |
| Illumina Mean Coverage Depth | 744.788× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 18,256,656 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.63% |
| Estimated genome contamination | 0% |
| Illumina depth of coverage | 744.788× |
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