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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2021 |
| Length | 4,911,471 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 17 (0 Circularized) |
| N50 | 673,753 nt |
| %GC | 53.72% |
| Organism Summary | |
|---|---|
| Name | ATCC® 14536™ |
| Strain Name | AJ 2189 [IAM 1600] |
| Isolation | Rice paddy |
| Tags | |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4448 |
| Number of Hypothetical Proteins | 300 |
| Number of tRNA | 66 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 13,129 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 3,964,216 |
| Illumina Mean Coverage Depth | 135.736× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads3,964,216
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.25%
PassedAverage depth of coverage135.736×
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