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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 14536™ |
| Strain Alias | AJ 2189 [IAM 1600] |
| Isolation | Rice paddy |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2021 |
| Length | 4,911,471 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 17 (0 Circularized) |
| N50 | 673,753 nt |
| %GC | 53.72% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4460 |
| Number of Hypothetical Proteins | 291 |
| Number of tRNA | 66 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 13,129 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 3,964,216 |
| Illumina Mean Coverage Depth | 135.736× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 3,964,216 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.67% |
| Estimated genome contamination | 1.71% |
| Illumina depth of coverage | 135.736× |
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