Organism Summary | |
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Catalog Number | ATCC® 14536™ |
Strain Alias | AJ 2189 [IAM 1600] |
Isolation | Rice paddy |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | November 30, 2021 |
Length | 4,911,471 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 17 (0 Circularized) |
N50 | 673,753 nt |
%GC | 53.72% |
Annotations Summary | |
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Number of CDS | 4448 |
Number of Hypothetical Proteins | 300 |
Number of tRNA | 66 |
Number of 16s rRNA | 1 |
Number of 23s rRNA | 1 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 13,129 |
Oxford Nanopore Median Q Score | 21 |
Illumina Read Count | 3,964,216 |
Illumina Mean Coverage Depth | 135.736× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 3,964,216 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 100% |
Estimated genome contamination | 0.25% |
Average depth of coverage | 135.736× |