Organism Summary | |
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Catalog Number | ATCC® 18804™ |
Strain Alias | CBS 562 [572, CCRC 20512, CECT 1002, DBVPG 6133, IFO 1385, IGC 3436, JCM 1542, NCYC 597, NRRL Y-12983] |
Isolation | Skin lesion of erosio interdigitalis |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | October 29, 2021 |
Length | 14,698,689 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 29 (0 Circularized) |
N50 | 1,877,799 nt |
%GC | 33.52% |
Annotations Summary | |
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Number of BUSCO Annotations | 727 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 487,526 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 36,625,312 |
Illumina Mean Coverage Depth | 322.803× |
Illumina Median Q Score | 34 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 36,625,312 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
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Estimated genome completeness | 88.65% |
Average depth of coverage | 322.803× |