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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 29, 2021 |
| Length | 14,698,689 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 29 (0 Circularized) |
| N50 | 1,877,799 nt |
| %GC | 33.52% |
| Organism Summary | |
|---|---|
| Name | ATCC® 18804™ |
| Strain Name | CBS 562 [572, CCRC 20512, CECT 1002, DBVPG 6133, IFO 1385, IGC 3436, JCM 1542, NCYC 597, NRRL Y-12983] |
| Isolation | Skin lesion of erosio interdigitalis |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 727 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 487,526 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 36,625,312 |
| Illumina Mean Coverage Depth | 322.803× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads36,625,312
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness88.65%
PassedAverage depth of coverage322.803×
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